That disabled all changes to spawn system - including removal of invalid ships.

It's not a source of a problem. All 16+ Xavorion mods work - it's something else you've added to the mix.

There's a "Mod Compatibility" discussion here, maybe your mod is already listed there.

The only mods I used were Xavorion official mods:
https://imgur.com/a/7BaEHcw

Originally posted by Axebeard:

The only mods I used were Xavorion official mods:
https://imgur.com/a/7BaEHcw

Ah, I see. You really need to enable XSF mods as listed at this mod page.
You can opt out of Mining module, others have to be enabled.

What you have now is not working at all, even if it seems like "working".

The other thing is - your save file is corrupted at this point. I'll need to check why it was even possible to do it.

EDIT:

Easiest way of installing is either via Quick Install collection, or Extended Gameplay Preset collection. Those 100% work, as long as you enable therm all in game menu.

Which XSF mods do I need? It looks like they're all optional. I have the Sector one, not shown in that screenshot. Could that explain why the Lost Friend mission I attempted seems to spawn endless waves of pirates, or is that something else?

EDIT:
I started a game with the Quick Install mod list and everything seems to be working fine. Only thing I noticed is that with a trade module, I can't click the % to sort by %, but the other columns are sortable.

Thanks for the info,

not sure why, trade UI wasnt changed. Didnt even know it was sortable ( :D )

It might have been from using a low tier Trading Module, I upgraded to a blue one and now it sorts so I dunno. Other than that, Xavorion as a whole seems pretty cool, and yeah it only really seems to make sense when you have the full pack enabled.