bottles are made in assembler I think, you will need metal grids to make one. I usually end up scavenging ships for my first few metal grids.

for the crash just look at existing discussions on the very same topic, there are 2 or 3 posts about this already

Mentioned the fix in the other fuel refinery thread, but I'll mention it here too; make sure you have Oxygen enabled in your world settings. If it's off SE doesn't load modded gas definitions, and the refinery throws an exception because its outputs are undefined.

And yes, Bottles are an Assembler item, you'll need Large Steel Tubes and Nickel