That INI function is for the SS Converter Table and has nothing to do with the conversion on restart.

There is no way to prevent that from happening if you run this mod. Which is why its listed in known issues. (Pinned Bugs discussion)

Simple explanation is: This mod is forked from S+, some S+ structures were put into the vanilla game about 2 years ago (Homestead patch), they didn't change the asset names/path names when they incorporated them, on restart ark loads mod assets first, therefore on restart it loads this mods asset files instead of the vanilla game asset files.

Me changing the file names would cause everyone's structures to disappear, therefore the problem for the moment has no obvious resolution and I am not willing to cause problems for no-wipe servers as many moved to this mod to prevent this exact thing from happening on their servers.

P.S. I don't check this steam page too often, so I recommend heading to the discord to get more responses from me.