Same problem, but on version 1.1
The bug reporter writes:
Tried to load a mod with the same packageId several times: LWM.DeepStorage. Ignore duplicates.
D:\RimWorld v1.1.2654\Mods\DeepStorage
D:\RimWorld v1.1.2654\Mods\Deep Storage
Verse.Log:Error(String, Boolean)
Verse.ModLister:TryAddMod(ModMetaData)
Verse.ModLister:RebuildModList()
Verse.ModLister:.cctor()
Verse.ModsConfig:.cctor()
Verse.LoadedModManager:InitializeMods()
Verse.LoadedModManager:LoadAllActiveMods()
Verse.PlayDataLoader:DoPlayLoad()
Verse.PlayDataLoader:LoadAllPlayData(boolean)
Verse.<>c:<Start>b__6_1()
Verse.LongEventHandler: RunEventFromAnotherThread(Action)
Verse.<>c:<UpdateCurrentAsynchronousEvent>b__27_0()
System.Threading.ThreadHelper:ThreadStart_Context(Object)
System.Threading.ExecutionContext:RunInternal(ExecutionContext, ContextCallback, Object, Boolean)
System.Threading.ExecutionContext:Run(ExecutionContext, ContextCallback, Object, Boolean)
System.Threading.ExecutionContext:Run(ExecutionContext, ContextCallback, Object)
System.Threading.ThreadHelper:ThreadStart()

Originally posted by Seto Kaiba:

I've tried to use tall shelf's and skips but they can only store 2 stacks of items no matter the weight which makes them useless

Well, I fixed it by changing the location of the mods. At first I turned off most of the mods, and then turned on 2-3 mods. I found the problem with the elimination method. If you have a fridge mod (RimFridge) installed, put it above this mod and sort the mods. Helped me.

thanks man!