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The only thing that really counts are the animals as you get many nanites if you scanned everyone. And for the animals the game actually tells you where to find them.
The plants and minerals are just for perfection 🤪
This is something that tells you what you can expect on given planet. It's only informative.... and it's often wrong. Expecially on planets hand-tweaked by devs, like expedition starter and rendezvous systems. In those you see discrepant info on discovery quide, live planet scanning and this guide. While adding helpful info for those who aim for completeness, devs botched the job and added to the confusion, IMHO.
The only neat thing about it is it shuts up other mission-specific tips appearing on lower-right banner and disappears from the screen quite fast, too. I like having it selected when doing free exploring for this reason.
That one require to scan some fauna, flora and mineral, and to survey a mineral, gas and electromagnetic hot spot... you just have selected the wrong mission on the journal
While I was away some of the discoveries had gone away and were available to be discovered again. So I ended up with more than the count shown for minerals and flora.
Technically, you probably can do it in one go on some planets. Unfortunately, there are some planets that are "legacy" from older iterations of the galaxy. My home base planet (discovered over five years ago) shows I discovered 9 of the six planets currently in system and 14 of the 9 fauna still there.
So it can make you crazy if you want to use the guide as a fun activity.
I think you're not suppose to find all flora and mineral on a planet, since you do not get the thousands of nanites you get instead for finding all animals.
Anyway, you can find everything, just keep in mind that some flora and minerals can be found only at specific locations, like under water, underground, on mountains or even at north/south.
Regardless of how you obtained the mission, if you don't want to do it, then don't.
Edited Note: I get that you want an easy way to do it, but I'm not aware of an easy way to do it. I also don't get why you think that there should be.
Only the Animals give you any kind of reward for finding them all.
As far as hunting animals goes, any underwater ones have the best chance of being found in deeper oceans so if a planet has large bodies of water that's the place to look for them.
Flying and Land animals are easily found just by running around usually, go hunt some salvage or Drop Pods or something and you'll probably find them.
And then there are the Underground creatures.. the bane of any would be explorer.
These little gits can range from easy to find to damn near impossible to find at times.
I have spent hours on some planets looking for underground creatures..
There are no good tricks I know of for Underground creatures.. best I can offer is get a lot of charts and look for NPC structures and hope they have caves near them.. and then hope the creatures bloody spawn in them.
Do be sure to fully check the creatures text when you're in the Discoveries tab too, some of them can only be found in the North or South of certain planets and that can lead to a lot of wasted time if you just glance the creature info and fail to note that.
The planet in question is in Euclid galaxy, (the starter galaxy). Portal coordinates are in my second reply. If you want to see what it's like to have everything, there's a sample planet with a detailed list of everything on it. Completion is... underwhelming, to say the least. Doable, just not exactly fulfilling.
Plants:
There are often two species of cave marrow.
Red and yellow plants have solo versions and large bed versions. I've heard that sometimes there may be two species of solo ones, but I'm not certain.
There are sometimes two species of the gas explosion hazardous plants. Maybe the others, too, but I've mostly seen it with the gassy ones.
Minerals:
There are many many duplicates.
Mountaintops and other desolate areas will usually have 3 unique minerals
Caves have stalagmites and stalactites. I think they may rarely have a second stalagmite.
Caves may also have other unique minerals.
Shallow water, deep water, and water caves have unique minerals.
For animals there is help in form of the discovery page where hints are listed to what creature and where/when to find (at times I'm glad about it - at times I don't look at so that I can feel a little bit of nostalgia in just hunting as it was some years ago without any hints given to the players).
For minerals and plants there is no such hint, but it's doable without any real hassle by just remembering that there are different biomes (and I'm not talking about underground/water/land), but actual biomes. You have barren spots and lush spots on a planet. If you find those (which is easy) and then underwater and underground places, too, you will find all plants and stones with ease.
(Remember to look for sodium-/oxygen-/jet-booster-plants and dangerous flora, too. And remember, too, that there can be duplicates of them - they look the same but are different species.)
About animals, you have some that are only at north or at south, so you must check the discovery page otherwise you'll never find them if you aren't on the right "pole"....
That always was the case - what helped before there were hints at the discovery page: Jumping into the ship and just flying to the other side of the planet to find the last mssing 50 feet tall creature that someone already could spot from space but you weren't able to because render distance. Or so.
Of importance is to check places at day and night, too (or just spoilering it for yourself by looking at the discovery page).