I love this mod to bits and can't do without it anymore.
I just found one bug. When I have a small ship and do Alt Right Click to drop large components from my inventory, it sometimes places them in blocks that wouldn't be accessible otherwise through the port I'm pointing at due to them only being connected through small conveyors. Then inventory manager scripts can't move those items back to their assigned containers. And in cases where the the block where they ended up doesn't have an available access point, we have to grind down stuff to be able to access those items again.