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As always, validating RimWorld will force mods to update.
@SCRUBLORD PICKLE The reprocessor will link within 12 tiles in a circle around it, which is already large area. If you hadn't looked at the mod settings, you can toggle the reprocessor's isMinifyable, and reinstall it closer to the genebanks needed.
Still, I've added custom link range to the TODO list.
I just made a patch but it would be great for it to be official - Patch_CompactGeneBanks.xml:
<Patch>
<!-- Allow Compact Gene Banks to be used by GeneSeparator -->
<Operation Class="PatchOperationFindMod">
<mods>
<li>Compact Gene Banks/Processors</li>
</mods>
<match Class="PatchOperationAdd">
<xpath>Defs/ThingDef[defName="GeneSeparator"]/comps/li[@Class="CompProperties_AffectedByFacilities"]/linkableFacilities</xpath>
<value>
<li>CompactGeneBank</li>
<li>CompactGeneBankArchotech</li>
</value>
</match>
</Operation>
</Patch>
Sorry if this is the wrong place to submit!
You may need to validate files on RimWorld to force the mod update.