Currently, this mod and Extended GUI both override the crafting config files in their entirety. This is resulting in one of the two mods taking priority over the other.

If you have the time, I would suggest using .patch files instead of replacing the configs outright to partially resolve the compatibility issue. In order to fully resolve the compatibility issue, you will likely need to create an intermediate compatibility patch. This was the solution I came too when trying to resolve the compatibility issues between Extended GUI and Pixel Printable Crafting Stations. In a nutshell, the patch would likely just have to shift the Y coordinate of the buttons up to match the taller menu and might look something like the following:


You can read about patching here[community.playstarbound.com] and if you have any questions please feel free to ask.

Thanks!