I broke Leah. Oops.

[Phantom Earth]

While doing Leah's quest I ran from Ashley's room to the art room and grabbed the spray paint too quickly, I guess, resulting in something like a sequence break.

After giving Leah the spray paint I was able to continue the quest normally but the warmer/colder hints meant to lead you to the closet kept appearing every 30 seconds or so, even after finishing the quest, and once I was done I found that it treated Leah as unavailable. I was unable to select her for VR and she never came to talk to Lety, preventing the progress of Lety's quest.

TL;DR: Sprinting to grab the spray paint as fast as possible seems to cause issues.

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Also, only tangentially related, the case of the missing body parts appears to have returned. When Leah stripped down for action her chest and pelvis were invisible as though the texture for her underwear was applied to make those areas transparent, including in the cutscene. This happened twice, once on the same save as the previous bug and again on a new save. Doing a quick save and reloading fixed that issue.

I am on the standard update channel (no betas or testing branches) and have the current update to 1.2.2. The spray paint issue occurred while using the female player; the invisible parts was on 2 different saves, one of each gendered player.