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https://www.reddit.com/r/SteamDeck/comments/sy3298/warning_to_windows_dualbooters/
I've made the experience, that with GRUB and Windows, you are only one mandatory Windows update away from having your Linux system bricked by Micro$oft, hence I stopped using GRUB. No idea why Valve isn't shipping SteamOS 3 with systemd.
You'll probably have to recover/re-setup your Steam Deck manually:
https://help.steampowered.com/en/faqs/view/1B71-EDF2-EB6D-2BB3
Always make backups!
I concur that unless you want to do some really quite painful debugging *and* are enough of an expert that you've already started and are finding it fun, a factory reset is definitely the way to go.
Its a tenuous relationship and 99% of the time its Windows breaking things.
This is why many resort to Virtual Machining Windows when doing the multi-boot option or at least a Motherboard smart enough to keep them segregated. (Obviously not really an option on SteamDeck - just saying the pain you feel is shared everywhere - no matter the platform)
Grub is king yes - but Windows can mess that up with very little effort.