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Thanks! This worked semi-perfectly.
It just spontaneously started functioning correctly while I formatted the SD card lmao
Glad I could help, or kind of at least! Take care!
Because of this you can not share a game library between Windows and Linux, as Proton does not run Windows games installed on NTFS, along with it needing "compatdata" that Windows doesn't need.
SteamOS presumably checks for this in Game Mode, whereas Desktop Mode just lets you mount and use the drive, like a normal Linux system would.
From what I saw when researching to fix the problem, Ext4 is actually one of the major file systems used in Arch Linux (the Linux distro Desktop Mode is based in).
The other one I mentioned, BTRFS, is occasionally used for system files as it has benefits there, thought Ext4 is the safe default.
Both SteamOS and the Arch-based distro I run on my desktop use BTRFS for the OS files, but just like SteamOS I have my system set up to use an Ext4 partition for the /home data.
Both of these are Linux-focussed filesystems and work best with it, but while the standards are open Windows does not support them.
Linux does support NTFS, ExFAT, ect., but not to the same degree as Windows.
Example, NEVER repair an NTFS filesystem on Linux if it gets used by Windows too, this is likely to corrupt it.
Circling back to the Deck's SD cards, as I said before this better support by the OS is why Game Mode requires Ext4, given the complexity of games and especially the compatibility layer.
P.S. In case you're curious, I use Garuda Linux on my desktop, but if you wish to try Linux somewhere else (VM, spare machine or drive), start with Linux Mint or Kubuntu.
Thanks for informing me :)