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I had the same issue.
Species, Color A, Color B traits you can only extract.
You can loot or extract other traits which are not necessary for creation of an animal (can only loot some things, can only extract others).
You can pet animals to get random traits from them from time to time (usually the ones they have, rarely the ones they don't have).
This way I can create "colonies" of similar animals in different biomes. It just takes a bit of time. I keep an "experiment" shelter right by my science center to take DNA to so I can see what things look like before I make more.