Rune Factory 3 Special: Material List

All ore, fish, foraged items, and monster drops

Privera Forest

Ore: Scrap Metal, Iron, Bronze, Earth Crystal, Amethyst
Fish: Masu Trout, Cherry Salmon, Squid, Needlefish, Lamp Squid, Gibelio,Throbby Snapper
Forage: Apple, Apple Juice, Light Crystal, Water Crystal, Small Crystal, Dark Crystal, Mushroom, Toyherb, Lamp Grass

Pomme Pomme: Apple
Wooly: Wooly Furball, Clippers
Orc: Cheap Cloth, Glue, Old Bandage
High Orc: Glue, Cheap Bracelet
Rider Orc: Cheap Cloth, Warrior's Proof, Glue
Orc Hunter: Recovery Potion, Arrowhead, Gunpowder
Orc Archer: Recovery Potion, Arrowhead, Gunpowder
Beetle: Insect Carapace, Rigid Horn
Elefun: Cheap Waterpot, Fur
Leaf Ball: Root, Strong Vine
Chipsqueek: Branch, Fur
Buffamoo: Milk (S), Milk (M)
Big Muck: Spore, Plant Stem
Ant: Insect Carapace, Insect Mandibles, Pretty Carapace
Killer Ant: Insect Carapace, Pretty Carapace, Lumber
Spider: Strong Thread, Pretty Thread, Insect Mandibles
Flower Blossom: Root, Strong Vine, Plant Stem
Onion Ghost: Ghost Hood
Heracles: Rigid Horn
Planchoa: Root, Plant Stem, Strong Vine
Octopirate: Fish Fossil, Vital Gummie, Ammonite
Grimoire: Unknown
Greater Demon: Chest Hair
Chimera: Devil Blood
Crystal Mammoth: Unknown
Tanuking (boss): Tanuki Leaf

Sol Terrano Desert

Ore: Scrap Metal, Iron, Bronze, Silver, Emerald, Fire Crystal, Ruby
Fish: Crucian Carp, Sardine, Chub, Sand Flounder, Rockfish, Char, Squid, Sun Squid, Lobster, Shrimp, Turbot, Throbby Snapper
Forage: Pumpkin, Eggplant, Corn, Tomato, Orange, Fish Fossil, Fire Crystal, Earth Crystal, Dark Crystal, Wind Crystal, Love Crystal

Slime: Small Crystal
Goblin Pirate: Oil, Quality Cloth, Silk Cloth
Gangster Goblin: Oil, Quality Cloth, Skull, Old Bandage
Goblin Don: Quality Cloth, Skull
Captain Goblin: Quality Cloth, Wine, Skull
Scorpion: Scorpion Tail, Pretty Carapace
Shadow Panther: Panther Claw, Fur, Quality Fur
Tomato Ghost: Tomato Seeds, Tomato, Ghost Hood, Silk Cloth
Monster Box: Broken Box, Failed Dish, Disastrous Dish
Flower Lion: Root, Plant Stem
Death Stalker: Pretty Carapace, Insect Carapace, Scorpion Tail, Scorpion Pincer
Duck: Fur, Quality Fur
Big Duck: Quality Fur
Hammer Troll: Giant's Nail
Ignis: Magic Crystal, Fire Crystal
Weagle: Branch, Wind Crystal
Tricky Muck: Spore, Plant Stem, Poison Powder
Troll: Giant's Gloves, Giant's Nail
Master Troll: Giant's Gloves, Giant's Nail
Titan: Giant's Gloves
Ancient Bone (boss): Fish Fossil

Oddward Valley

Ore: Scrap Metal, Bronze, Silver, Gold, Wind Crystal
Fish: Pike, Mackerel, Snapper, Salmon, Squid, Skipjack, Throbby Snapper, Autumn Flounder
Forage: Wind Crystal, Water Crystal, Dark Crystal, Love Crystal, Small Crystal, Baked Onigiri

Tortas: Turtle Shell, Bronze, Iron
Hornet: Insect Carapace, Honey
Hobgoblin: Glue, Warrior's Proof, Old Bandage
Hell Spider: Pretty Thread, Strong Thread
Heracles: Rigid Horn
Buffaloo: Bull's Horn
Cluckadoodle: Egg(S), Egg(M), Bird's Feather
Mino: Grapes
Goblin: Warrior's Proof, Onigiri, Glue
Goblin Archer: Warrior's Proof, Gunpowder, Old Bandage, Arrowhead, Glue
Blackbird: Bird's Feather, Branch
Flower Lily: Root
Furpy: Fur, Branch
Planchoa: Root, Plant Stem, Strong Vine
Minotaur: Hammer Piece, Devil Horn
Gigantes: Hammer Piece, Giant's Nail, Giant's Gloves
Pepper Ghost: Pepper, Ghost Hood
Fairy: Fairy Dust
Sky Fish: Fish Fossil, Can
Death Fungus: Poison Powder
Hinoe (boss): Red Lion Fur
Kinoto (boss): Blue Lion Fur

Vale River

Ore: Scrap Metal, Silver, Gold, Platinum, Water Crystal, Sapphire
Fish: Pond Smelt, Flounder, Rainbow Trout, Glitter Snapper,Taimen, Blowfish, Tuna, Yellowtail, Throbby Snapper
Forage: Love Crystal, Water Crystal, Light Crystal, Radish, Icecream

Penguin: Fur, Quality Fur
Snowy: Orange
Orc Viking: Wine, Shoulder Piece, Glue
Ogre Viking: Wine, Shoulder Piece
Flower Crystal: Root, Plant Stem
Turnip Ghost: Turnip, Turnip Seeds
Dark Slime: Wine, Sapphire
Silver Wolf: Wolf Fang
Little Wizard: Magic Powder, Medicine Bread+, Magic Crystal
Tundra: Water Crystal
High Orc Viking: Wine, Shoulder Piece
High Ogre Viking: Wine, Shoulder Piece, Glue
Mammoo: Cheap Waterpot
Sealy: Can
Hunter Wolf: Fur, Quality Fur, Wolf Fang
Necro: Ghost Hood
Ghost: Skull, Ghost Hood
Death Wall (boss): Unknown

Dragon Cave

Ore: Scrap Metal, Silver, Gold, Platinum
Forage: Light Crystal, Water Crystal, Love Crystal, Dark Crystal, Wind Crystal, Small Crystal, Blue Crystal Seeds

Daemon: Devil Horn
Arch Daemon: Devil Horn, Devil Blood
Little Mage: Magic Crystal
Little Emperor: Medicine Bread+, Magic Powder
Faust: Skull, Ghost Hood
Blood Panther: Panther Claw, Fur, Quality Fur
Queen Bee: Insect Mandibles
Gobble Box: Broken Hilt
Little Golem: Gold
Dark Fairy: Fairy Dust
Minotaur King: Hammer Piece, Devil Horn
Little Dragon: Dragon Fang
Airror: Wind Crystal, Magic Crystal

[Wereserts]

Also the Autumn Flounder in Oddward. Lobster in Sol Terrano. Lamp squid in Privera Forest. Tuna in Vale. Yellowtail in vale. Throbby Snapper can be found in any biome. Shrimp in sol terrano. Gibelio in Privera Forest. Turbot in Sol Terrano.
I looked for awhile for this info hope it helps others

[Wereserts]

You forgot that Vale also has Taimen and Blowfish for fishing. And Sun squid in Sol Terrano