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As of video cards, I'll say this I don't have much experience with AMD hardware, but from what I heard and other people have told me, NVIDIA cards tend to work and run better on Linux. Again, this is just what I heard, I'm really eager to test this myself to see how big the difference is, if any so currently I'm saving up for an all MAD build :)
One more thing, this is more of a software thing and I know some people will disagree with me here. But if you want to have a Linux box for gaming, I'd recommend the Solus distribtuion I had less issues with it than Linux Mint, but this is just my experience :D
Hope this helps you, I'm sure there are others out there more knowledgeable than myself and I'm curious what they have to say :D
Nvidia is safe bet for Linux (but AMD is getting better every year and maybe soon will be as good as Nvidia?).
With regard to GPU: if your main task is gaming and you planing to use Ubuntu based distros - probably better stick with Nvidia for now.
So OP is right - you should choose wisely your hardware if you planning using Linux on it.
Where?
No, you can. Because it is not about today and tomorrow regressions. It is about good vendor support.
No it is not. Wasting time it is searching tons of 3rd party sites about Linux hardware compatibly. Official, centralized resource doesn't exist. And thats why there certified Linux hardware exist. Ubuntu is doing great job btw to doing this. And thats why Linux users prefer ThinkPads because of their superior Linux support.
So, this not a waste of time, as you said. The waste of time (an money) - it is rebuild again you PC because you not satisfied how you hardware perform on Linux.
Cat on Linux if it was that simple i would have not asked the question.
https://certification.ubuntu.com/certification/catalog/
It's a tedious process and can eat an entire evening, but it's worth if you don't want to buy new parts just because of compability issues.
Google is your best friend doing the research, however keep in mind a couple of things, if the hardware in question has no information about it it's probably going to work, for the most. If people claim performance or compablity is bad/weak on Linux I'd avoid said product and look for an alternative.
I have Lenovo mobo in Workstation but it's not about ThinkPads, it's Fujitsu Siemens. there's much more PC builds than ThinkPads with equally supported mobos.
to OP: yes, it is hard to pick the right hardware, and it is even harder to suggest something blindly. what you can get is names of popular brands like Lenovo, ASUS. then you should research for yourself. maybe putting more strict questions can give more answers. something like "is there any issues with ASUS XXXXYYY that I have to be aware of?" or "should I pick Lenovo YYYXX or MSI YUUUYY?"