Captain's Edition Slipstream Mod Manager

[Mac Like-a The Potty]

I can't get Captain's Edition to install with the Slipstream Mod Manager. I'll get this in the log

06:10:41.984 [Thread-9] INFO net.vhati.modmanager.core.ModPatchThread - Installing mod: FTL Captains Edition 1.204.ftl
06:10:43.537 [Thread-9] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: img/main_menus/main_base2.png
06:10:44.705 [Thread-9] WARN net.vhati.modmanager.core.ModPatchThread - Non-existent innerPath wasn't appended: data/dlcBlueprintsOverwrite.xml
06:10:44.708 [Thread-9] WARN net.vhati.modmanager.core.ModPatchThread - Non-existent innerPath wasn't appended: data/misc.xml
06:10:45.283 [Thread-9] WARN net.vhati.modmanager.core.ModPatchThread - Non-existent innerPath wasn't appended: data/dlcEventsOverwrite.xml
06:10:46.731 [Thread-9] WARN net.vhati.modmanager.core.ModPatchThread - Non-existent innerPath wasn't appended: data/dlcEvents.xml
06:10:46.733 [Thread-9] WARN net.vhati.modmanager.core.ModPatchThread - Non-existent innerPath wasn't appended: data/dlcEvents_anaerobic.xml
06:10:47.133 [Thread-9] WARN net.vhati.modmanager.core.ModPatchThread - Non-existent innerPath wasn't appended: data/dlcBlueprints.xml

and the game will break and I have to reinstall to get it working again. I can't find anything on either the mod thread or the manager thread. Help please.

It's not clashing with any other mods since they've been removed trying to get CE to work, so I've got no idea why it isn't working for me when it seems to be working for everyone else using SMM.

[Alphy]

same problem here! none of my mods work. They all crash the game and I have to verify the game to get things working

[Sirius]

FTL updated again a short time ago.
Was a small update, but I assume mods are broken again.

[Alphy]

sigh....well that sucks. I hope someone finds a way around this

[Mac Like-a The Potty]

Found the problem and the fix. You have to delete the back ups stored by SMM and then patch with a fresh install of FTL.

[Alphy]

ok thanks. I'll try it out soon :)