I just tried this video out and some of the buttons don't do anything. Even though I copied the configuration exactly. I also am unable to sheathe my weapons. For some reason Square makes me run auto, L1 and 2 do nothing and R1 for whatever reason switched my POV. Select doesn't do anything either.
The controller I use is a PS3 DualShock 3 SixAxis with MotioninJoy.